Bamboo grove, Arashiyama

Mark Muldoon

Reader, School of Mathematics


Teaching:

Schedule, Winter/Spring 2016
The links below lead to online materials for my current courses

Things to download:


Room: Room 2.130, Alan Turing Building (number 46 on this campus map)
Phone: (0161) 306 3646
(44 161 306 3646   from overseas)
Email: M.Muldoon@Manchester.ac.uk

In the eighteenth century and since, Newton came to be thought of as the first and greatest of the modern age of scientists, a rationalist, one who taught us to think on the lines of cold and untinctured reason.

I do not see him in this light. I do not think that any one who has pored over the contents of that box which he packed up when he finally left Cambridge in 1696 and which, though partly dispersed, have come down to us, can see him like that. Newton was not the first of the age of reason. He was the last of the magicians, the last of the Babylonians and Sumerians, the last great mind which looked out on the visible and intellectual world with the same eyes as those who began to build our intellectual inheritance rather less than 10,000 years ago. Isaac Newton, a posthumous child born with no father on Christmas Day, 1642, was the last wonderchild to whom the Magi could do sincere and appropriate homage.

… Why do I call him a magician? Because he looked on the whole universe and all that is in it as a riddle, as a secret which could be read by applying pure thought to certain evidence, certain mystic clues which God had laid about the world to allow a sort of philosopher's treasure hunt to the esoteric brotherhood. He believed that these clues were to be found partly in the evidence of the heavens and in the constitution of elements (and that is what gives the false suggestion of his being an experimental natural philosopher), but also partly in certain papers and traditions handed down by the brethren in an unbroken chain back to the original cryptic revelation in Babylonia. He regarded the universe as a cryptogram set by the Almighty - just as he himself wrapt the discovery of the calculus in a cryptogram when he communicated with Leibniz. By pure thought, by concentration of mind, the riddle, he believed, would be revealed to the initiate.

From a lecture prepared by John Maynard Keynes for the 300th anniversary of Newton's birth.


Top Schedule, Autumn 2016

Weekday 9:00 → 10:00 10:00 → 11:00 11:00 → 12:00 12:00 → 1:00 1:00 → 2:00 2:00 → 3:00 3:00 → 4:00 4:00 → 5:00
 
Monday
 
    Office Hours
Available to meet tutees
Alan Turing 2.130
  Maths in the Life Sciences
Seminar
various venues
Gemma Lamming
(Project Student)
from 3:30–4:30
 
Tuesday
 
Ashe Lab
Group Meeting
Michael Smith A.1018
    Tutorial for 2M1
B19, Jackson's Mill
  Supervision for Foundations
of Pure Mathematics
My advisees
Alan Turing: G.109
Dynamical Systems Seminar
Frank Adams Room 1
 
 
Wednesday
 
  Grace Sawyer
(Project Student)
Joe Dooley
(Project Student)
         
 
Thursday
 
  Jackson & White Labs
Group Meetings
Michael Smith D.3301
         
 
Friday
 
               

Top Preprints & Papers

Published:

Jeremy P. Huke and Mark R. Muldoon, Embedding and Time Series Analysis, Mathematics Today, 51, (2015).

Elena E. Giorgi, Harikrishnan Balachandran, Mark Muldoon, Norman L. Letvin, Barton F. Haynes, Bette T. Korber and Sampa Santra, Cross-reactive potential of human T-lymphocyte responses in HIV-1 infection, Vaccine, 32, (2014).

Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar, Bhavna Hora, Anna Berg, Fangping Cai, Jennifer Hopper, Thomas N Denny, Hairao Ding, Christina Ochsenbauer, John C Kappes, Rachel P Galimidi, Anthony P Jr West, Pamela J Bjorkman, Craig B Wilen, Robert W Doms, Meagan O'Brien, Nina Bhardwaj, Persephone Borrow, Barton F Haynes, Mark Muldoon, James P Theiler, Bette Korber, George M Shaw and Beatrice H Hahn, Phenotypic properties of transmitted founder HIV-1, PNAS, 110, (2013).

Hua-Xin Liao, Chun-Yen Tsao, S. Munir Alam, Mark Muldoon, Nathan Vandergrift, Ben-Jiang Ma, Xiaozhi Lu, Laura L Sutherland, Richard M. Scearce, Cindy Bowman, Robert Parks, Haiyan Chen, Julie H Blinn, Alan Lapedes, Sydeaka Watson, Shi-Mao Xia, Andrew Foulger, Beatrice H Hahn, George M Shaw, Ron Swanstrom, David C Montefiori, Feng Gao, Barton F Haynes and Bette Korber, Antigenicity and Immunogenicity of Transmitted/Founder, Consensus, and Chronic Envelope Glycoproteins of Human Immunodeficiency Virus Type 1, Journal of Virology, 87, (2013).

Simon C. Bull, Mark R. Muldoon and Andrew J. Doig, Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory, PLoS ONE, 8, (2013).

Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Yue Hong, Michael R. H. White, Douglas B. Kell, Mark R. Muldoon and David S. Broomhead, A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation, Journal of Theoretical Biology, 297, (2012).

Sampa Santra, Mark Muldoon, Sydeaka Watson, Adam Buzby, Harikrishnan Balachandran, Kevin R. Carlson, Linh Mach, Wing-Pui Kong, Krishna McKee, Zhi-Yong Yang, Srinivas S. Rao, John R. Mascola, Gary J. Nabel, Bette T, Korber and Norman L. Letvin, Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multi-valent mosaic and consensus immunogens, Virology, 248, (2012).

David Broomhead, Jeremy Huke, James Montaldi and Mark Muldoon, Finite-dimensional behaviour and observability in a randomly forced PDE, Dynamical Systems, 27, (2012).

Mark Muldoon, Jeremy Huke and Kieran Smallbone, Dave Broomhead's 60th Birthday, Mathematics Today, 47, (2011).

Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Douglas B. Kell, Michael R. H. White, David S. Broomhead and Mark R. Muldoon, Interactions among oscillatory pathways in NF-κB signalling, BMC Systems Biology, 5, (2011).

Jennifer L. Kirchherr, Jennifer Hamilton, Xiaozhi Lu, S. Gnanakaran, Mark Muldoon, Marcus Daniels, Webster Kasongo, Victor Chalwe, Chanda Mulenga, Lawrence Mwananyanda, Rosemary M. Musonda, Xing Yuan, David C. Montefiori, Bette T. Korber, Barton F. Haynes and Feng Gao, Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120, Virology, 409, (2011).

Andrew D. Isaac, Mark Muldoon, Keri A. Brown and Terence A. Brown, Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified, Journal of Archaeological Science, 37, (2010).

Rigmor C. Baraas, Janus J. Kulikowski and Mark R. Muldoon, Bar-like S-cone stimuli reveal the importance of an intermediate temporal filter, Journal of the Optical Society of America A, 27, (2010).

Dan H. Barouch, Kara L. O'Brien, Nathaniel L. Simmons, Sharon L. King, Peter Abbink, Lori F. Maxfield, Ying-Hua Sun, Annalena La Porte, Ambryice M. Riggs, Diana M. Lynch, Sarah L. Clark, Katherine Backus, James R. Perry, Michael S. Seaman, Angela Carville, Keith G. Mansfield, James J. Szinger, Will Fischer, Mark Muldoon and Bette Korber, Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys, Nature Medicine, 16, (2010).

Sampa Santra, Hua-Xin Liao, Ruijin Zhang, Mark Muldoon, Sydeaka Watson, Will Fischer, James Theiler, James Szinger, Harikrishnan Balachandran, Adam Buzby, David Quinn, Robert J. Parks, Chun-Yen Tsao, Angela Carville, Keith G. Mansfield, George N. Pavlakis, Barbara K. Felber, Barton F. Haynes, Bette T. Korber and Norman L. Letvin, Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys, Nature Medicine, 16, (2010).

Jasmina Cehajic-Kapetanovic, Paul N. Bishop, Sidath Liyanage, Trevor King, Mark Muldoon and Ian M. Wearne, A novel Ocular Anaesthetic Scoring System, OASS, tool to measure both motor and sensory function following local anaesthesia, British Journal of Ophthalmology, 94, (2010).

Mark Muldoon, External Examiners, Mathematics Today, (2009).

Sampa Santra, Bette T. Korber, Mark Muldoon, Dan H. Barouch, Gary J. Nabel, Feng Gao, Beatrice H. Hahn, Barton F. Haynes and Norman L. Letvin, A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys, Proceedings of the National Academy of Sciences of the USA, 105, (2008).

M. J. Conyon and M. R. Muldoon, Ownership and Control: A Small-World Analysis, (2008).

Nicole Frahm, Daniel E. Kaufmann, Karina Yusim, Mark Muldoon, Can Kesmir, Caitlyn H. Linde, Will Fischer, Todd M. Allen, Bin Li, Ben H. McMahon, Kellie L. Faircloth, Hannah S. Hewitt, Elizabeth W. Mackey, Toshiyuki Miura, Ashok Khatri, Steven Wolinsky, Andrew McMichael, Robert K. Funkhouser, Bruce D. Walker, Christian Brander and Bette T. Korber, Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses, Journal of Immunology, 179, (2007).

Rong Rong, S. Gnanakaran, Julie M. Decker, Frederic Bibollet-Ruche, Jesse Taylor, Jeffrey N. Sfakianos, John L. Mokili, Mark Muldoon, Joseph Mulenga, Susan Allen, Beatrice H. Hahn, George M. Shaw, Jerry L. Blackwell, Bette T. Korber, Eric Hunter and Cynthia A. Derdeyn, Unique Mutational Patterns in the Envelope α2 Amphipathic Helix and Acquisition of Length in gp120 Hypervariable Domains Are Associated with Resistance to Autologous Neutralization of Subtype C Human Immunodeficiency Virus Type 1, Journal of Virology, 81, (2007).

Denise L. Kothe, Julie M. Decker, Yingying Li, Zhiping Weng, Frederic Bibollet-Ruche, Kenneth P. Zammit, Maraia G. Slazar, Yalu Chen, Jesus F. Salazar-Gonzalez, Zina Moldoveanu, Jiri Mestecky, Feng Gao, Barton F. Haynes, George M. Shaw, Mark Muldoon, Bette T. M. Korber and Beatrice H. Hahn, Antigenicity and immunogenicity of HIV-1 consensus subtype B envelope glycoproteins, Virology, 360, (2007).

M. J. Conyon and M. R. Muldoon, The Small World of Corporate Boards, Journal of Business Finance and Accounting, 33, (2006).

J. E. Forster, R. V. Abadi, M. Muldoon and I. C. Lloyd, Grading infantile cataracts, Ophthalmic and Physiological Optics, 26, (2006).

Eric A. Weaver, Zhongjing Lu, Zenadio T. Camacho, Fatiha Moukdar, Hua-Xin Liao, Ben-Jiang Ma, Mark Muldoon, James Theiler, Gary J. Nabel, Norman L. Letvin, Bette T. Korber, Beatrice H. Hahn, Barton F. Haynes and Feng Gao, Cross-Subtype T-Cell Immune Responses Induced by a Human Immunodeficiency Virus Type 1 Group M Consensus Env Immunogen, Journal of Virology, 80, (2006).

D. S. Broomhead, J. P. Huke, M. R. Muldoon and J. Stark, Iterated Function System Models of Digital Channels, Proceedings of the Royal Society of London, Series A, 460, (2004).

Cynthia A. Derdeyn, Julie M. Decker, Frederic Bibollet-Ruche, John L. Mokili, Mark Muldoon, Scott A. Denham, Marintha L. Heil, Francis Kasolo, Rosemary Musonda, Beatrice H. Hahn, George M. Shaw, Bette T. Korber, Susan Allen and Eric Hunter, Envelope-Constrained Neutralization-Sensitive HIV-1 After Heterosexual Transmission, Science, 303, (2004).

K. Berthelot, M. Muldoon, L. Rajkowitsch, J. Hughes and J. E. G. McCarthy, Dynamics and processivity of 40S ribosome scanning on mRNA in yeast, Molecular Microbiology, 51, (2004).

R. A. Clement, J. P. Whittle, M. R. Muldoon, R. V. Abadi, D. S. Broomhead and O. Akman, Characterisation of congenital nystagmus waveforms in terms of periodic orbits, Vision Research, 42, (2002).

Karina Yusim, Martine Peters, Oliver Pybus, Tanmoy Bhattacharya, Eric Delaporte, Claire Mulanaga, Mark Muldoon, James Theiler and Bette Korber, Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution, Philosophical Transactions of the Royal Society of London, B, 356, (2001).

M. C. Readman, M. R. Muldoon, L. Reynolds, R. Morris, M. Bayliss, D. Wood and I. Stewart, Control of free length when coiling a helical spring, IEE Proceedings-Control Theory and Applications, 148, (2001).

B. Korber, M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B. H. Hahn, S. Wolinsky and T. Bhattacharya, Timing the Ancestor of the HIV-1 Pandemic Strains, Science, 288, (2000).

D. S. Broomhead, R. A. Clement, M. R. Muldoon, J. P. Whittle, C. Scallan and R. V. Abadi, Modelling of congenital nystagmus waveforms produced by saccadic system abnormalities, Biological Cybernetics, 82, (2000).

D. S. Broomhead, J. P. Huke and M. R. Muldoon, Codes for spread spectrum applications generated using chaotic dynamical systems, Dynamics and Stability of Systems, 14, (1999).

R. B. Van Dyke, B. T. Korber, E. Popek, C. Macken, S. M. Widmayer, A. Bardeguez, I. C. Hanson, A. Wiznia, K. Luzuriaga, R. R. Viscarello, S. Wolinsky and the Ariel Core Investigators, The Ariel Project: A prospective cohort study of maternal-child transmission of human immunodeficiency virus type 1 in the era of maternal antiretroviral therapy, Journal of Infectious Diseases, 179, (1999).

Xia Jin, Caroline G. P. Roberts, Douglas F. Nixon, Yunzhen Cao, David D. Ho, Bruce D. Walker, Mark Muldoon, Bette T. M. Korber, Richard A. Koup and the ARIEL Project Investigators, Longitudinal and Cross-Sectional Analysis of Cytotoxic T Lymphocyte (CTL) Responses and their Relationship to Vertical HIV Transmission, Journal of Infectious Diseases, 178, (1998).

M. R. Muldoon, D. S. Broomhead, J. P. Huke and R. Hegger, Delay embedding in the presence of dynamical noise, Dynamics and Stability of Systems, 13, (1998).

Yunzhen Cao, Paul Krogstad, Bette T. Korber, Richard A. Koup, Mark Muldoon, Catherine Macken, Jia-Li Song, Zhanqun Jin, Jla-Qi Zhao, Sheila Clapp, Irvin S. Y. Chen, David D. Ho, Arthur J. Ammann and the Ariel Project Investigators, Maternal HIV-1 viral load and vertical transmission of infection: The Ariel Project for the prevention of HIV transmission from mother to infant, Nature Medicine, 3, (1997).

N. Martin, R. Koup, R. Kaslow, A. A. Ammann, A. J. Ammann, D. Asthana, A. Baur, Y. Bryson, S. Clapp, S. DeLaurentis, T. Devine, M. Feinberg, J. E. Fitzgibbon, M. G. Fowler, E. M. Garratty, R. Geffin, A. Gonzaga, M. Gray, S. Hetherington, J. K. Jansen, R. A. Kaslow, A. Keller, M. E. Klotman, B. Korber, A. Louzao, K. Luzuriaga, C. Macken, B. Mathieson, G. McSherry, M. Muldoon, J. I. Mullins, K. Nielsen, J. Oleske, P. Palumbo, A. Petru, S. Plaeger, Y. Riviere, P. Rossi, G. Scott, J. L. Sullivan, S. H. Vermund, D. Wara, R. J. Winchester, C. Winkler and S. Zeegen, Workshop on perinatally acquired human immuno-deficiency virus infection in long-term surviving children: A collaborative study of factors contributing to slow disease progression, Aids Research and Human Retroviruses, 12, (1996).

Mark R. Muldoon, David S. Broomhead and Jeremy P. Huke, Delay reconstruction for multiprobe signals, (1994).

R. S. MacKay and M. R. Muldoon, Diffusing through spectres: ridge curves, ghost circles and a partition of phase space, Physics Letters A, 178, (1993).

M. R. Muldoon, R. S. MacKay, J. P. Huke and D. S. Broomhead, Topology from time series, Physica D, 65, (1993).

D. S. Broomhead, J. Huke and M. R. Muldoon, Linear Filters and Non-linear Systems, Journal of the Royal Statistical Society. Series B, 54, (1992).


This page last changed Tuesday, 27 September 2016