Mark MuldoonReader, School of MathematicsTeaching:
Schedule, Winter/Spring 2017 Things to download:

Telling a story, John invented or developed a sceptical person rather than talk abstractly about an atmosphere of scepticism. He did something similar with Judas Iscariot, working in a tradition of Jewish writing in which narrative could be supplemented by more narrative to make particular points, to explain difficulties or to update the story. Since there was obviously a betrayal there needed to be a betrayer; Judas filled the role, and earlier mentions of him were made to fit the character that had developed. It is a complex and rather beautiful process, and once the power of fiction is let loose on such a character there is no knowing how he will end up.
From a 2006 book review, Blackening, by Frank Kermode.
Schedule, Winter/Spring 2017
Weekday 9:00 → 10:00 10:00 → 11:00 11:00 → 12:00 12:00 → 1:00 1:00 → 2:00 2:00 → 3:00 3:00 → 4:00 4:00 → 5:00
Monday
Maths in the Life Sciences
Seminar
various venues
Discrete Maths
Lecture
Chemistry: G.54
Tuesday
Ashe Lab
Group Meeting
Michael Smith A.1018Supervision for
Linear Algebra
My advisees
Alan Turing: G.110
Gemma Lamming
(Project Student)Dynamical Systems Seminar
Frank Adams Room 1
Wednesday
Thursday
Discrete Maths
Lecture
Chemistry: G.54
Mathematical Biology
Lecture
Williamson: G.03
Mathematical Biology
Problems Class
Williamson: G.03
Discrete Maths
Problems Class
Alan Turing: G.205
Friday
Discrete Maths
Problems Class
Alan Turing: G.205Office Hours
Available to meet tutees
Alan Turing 2.130
Joe Dooley
(Project Student)Mathematical Biology
Lecture
Alan Turing: G.205
Preprints & Papers
Published:Jeremy P. Huke and Mark R. Muldoon, Embedding and Time Series Analysis, Mathematics Today, 51, (2015).
Elena E. Giorgi, Harikrishnan Balachandran, Mark Muldoon, Norman L. Letvin, Barton F. Haynes, Bette T. Korber and Sampa Santra, Crossreactive potential of human Tlymphocyte responses in HIV1 infection, Vaccine, 32, (2014).
Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar, Bhavna Hora, Anna Berg, Fangping Cai, Jennifer Hopper, Thomas N Denny, Hairao Ding, Christina Ochsenbauer, John C Kappes, Rachel P Galimidi, Anthony P Jr West, Pamela J Bjorkman, Craig B Wilen, Robert W Doms, Meagan O'Brien, Nina Bhardwaj, Persephone Borrow, Barton F Haynes, Mark Muldoon, James P Theiler, Bette Korber, George M Shaw and Beatrice H Hahn, Phenotypic properties of transmitted founder HIV1, PNAS, 110, (2013).
HuaXin Liao, ChunYen Tsao, S. Munir Alam, Mark Muldoon, Nathan Vandergrift, BenJiang Ma, Xiaozhi Lu, Laura L Sutherland, Richard M. Scearce, Cindy Bowman, Robert Parks, Haiyan Chen, Julie H Blinn, Alan Lapedes, Sydeaka Watson, ShiMao Xia, Andrew Foulger, Beatrice H Hahn, George M Shaw, Ron Swanstrom, David C Montefiori, Feng Gao, Barton F Haynes and Bette Korber, Antigenicity and Immunogenicity of Transmitted/Founder, Consensus, and Chronic Envelope Glycoproteins of Human Immunodeficiency Virus Type 1, Journal of Virology, 87, (2013).
Simon C. Bull, Mark R. Muldoon and Andrew J. Doig, Maximising the Size of NonRedundant Protein Datasets Using Graph Theory, PLoS ONE, 8, (2013).
Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Yue Hong, Michael R. H. White, Douglas B. Kell, Mark R. Muldoon and David S. Broomhead, A systematic survey of the response of a model NFκB signalling pathway to TNFα stimulation, Journal of Theoretical Biology, 297, (2012).
Sampa Santra, Mark Muldoon, Sydeaka Watson, Adam Buzby, Harikrishnan Balachandran, Kevin R. Carlson, Linh Mach, WingPui Kong, Krishna McKee, ZhiYong Yang, Srinivas S. Rao, John R. Mascola, Gary J. Nabel, Bette T, Korber and Norman L. Letvin, Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multivalent mosaic and consensus immunogens, Virology, 248, (2012).
David Broomhead, Jeremy Huke, James Montaldi and Mark Muldoon, Finitedimensional behaviour and observability in a randomly forced PDE, Dynamical Systems, 27, (2012).
Mark Muldoon, Jeremy Huke and Kieran Smallbone, Dave Broomhead's 60th Birthday, Mathematics Today, 47, (2011).
Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Douglas B. Kell, Michael R. H. White, David S. Broomhead and Mark R. Muldoon, Interactions among oscillatory pathways in NFκB signalling, BMC Systems Biology, 5, (2011).
Jennifer L. Kirchherr, Jennifer Hamilton, Xiaozhi Lu, S. Gnanakaran, Mark Muldoon, Marcus Daniels, Webster Kasongo, Victor Chalwe, Chanda Mulenga, Lawrence Mwananyanda, Rosemary M. Musonda, Xing Yuan, David C. Montefiori, Bette T. Korber, Barton F. Haynes and Feng Gao, Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type1 subtype C gp120, Virology, 409, (2011).
Andrew D. Isaac, Mark Muldoon, Keri A. Brown and Terence A. Brown, Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified, Journal of Archaeological Science, 37, (2010).
Rigmor C. Baraas, Janus J. Kulikowski and Mark R. Muldoon, Barlike Scone stimuli reveal the importance of an intermediate temporal filter, Journal of the Optical Society of America A, 27, (2010).
Dan H. Barouch, Kara L. O'Brien, Nathaniel L. Simmons, Sharon L. King, Peter Abbink, Lori F. Maxfield, YingHua Sun, Annalena La Porte, Ambryice M. Riggs, Diana M. Lynch, Sarah L. Clark, Katherine Backus, James R. Perry, Michael S. Seaman, Angela Carville, Keith G. Mansfield, James J. Szinger, Will Fischer, Mark Muldoon and Bette Korber, Mosaic HIV1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys, Nature Medicine, 16, (2010).
Sampa Santra, HuaXin Liao, Ruijin Zhang, Mark Muldoon, Sydeaka Watson, Will Fischer, James Theiler, James Szinger, Harikrishnan Balachandran, Adam Buzby, David Quinn, Robert J. Parks, ChunYen Tsao, Angela Carville, Keith G. Mansfield, George N. Pavlakis, Barbara K. Felber, Barton F. Haynes, Bette T. Korber and Norman L. Letvin, Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys, Nature Medicine, 16, (2010).
Jasmina CehajicKapetanovic, Paul N. Bishop, Sidath Liyanage, Trevor King, Mark Muldoon and Ian M. Wearne, A novel Ocular Anaesthetic Scoring System, OASS, tool to measure both motor and sensory function following local anaesthesia, British Journal of Ophthalmology, 94, (2010).
Mark Muldoon, External Examiners, Mathematics Today, (2009).
Sampa Santra, Bette T. Korber, Mark Muldoon, Dan H. Barouch, Gary J. Nabel, Feng Gao, Beatrice H. Hahn, Barton F. Haynes and Norman L. Letvin, A centralized genebased HIV1 vaccine elicits broad crossclade cellular immune responses in rhesus monkeys, Proceedings of the National Academy of Sciences of the USA, 105, (2008).
M. J. Conyon and M. R. Muldoon, Ownership and Control: A SmallWorld Analysis, (2008).
Nicole Frahm, Daniel E. Kaufmann, Karina Yusim, Mark Muldoon, Can Kesmir, Caitlyn H. Linde, Will Fischer, Todd M. Allen, Bin Li, Ben H. McMahon, Kellie L. Faircloth, Hannah S. Hewitt, Elizabeth W. Mackey, Toshiyuki Miura, Ashok Khatri, Steven Wolinsky, Andrew McMichael, Robert K. Funkhouser, Bruce D. Walker, Christian Brander and Bette T. Korber, Increased Sequence Diversity Coverage Improves Detection of HIVSpecific T Cell Responses, Journal of Immunology, 179, (2007).
Rong Rong, S. Gnanakaran, Julie M. Decker, Frederic BibolletRuche, Jesse Taylor, Jeffrey N. Sfakianos, John L. Mokili, Mark Muldoon, Joseph Mulenga, Susan Allen, Beatrice H. Hahn, George M. Shaw, Jerry L. Blackwell, Bette T. Korber, Eric Hunter and Cynthia A. Derdeyn, Unique Mutational Patterns in the Envelope α2 Amphipathic Helix and Acquisition of Length in gp120 Hypervariable Domains Are Associated with Resistance to Autologous Neutralization of Subtype C Human Immunodeficiency Virus Type 1, Journal of Virology, 81, (2007).
Denise L. Kothe, Julie M. Decker, Yingying Li, Zhiping Weng, Frederic BibolletRuche, Kenneth P. Zammit, Maraia G. Slazar, Yalu Chen, Jesus F. SalazarGonzalez, Zina Moldoveanu, Jiri Mestecky, Feng Gao, Barton F. Haynes, George M. Shaw, Mark Muldoon, Bette T. M. Korber and Beatrice H. Hahn, Antigenicity and immunogenicity of HIV1 consensus subtype B envelope glycoproteins, Virology, 360, (2007).
M. J. Conyon and M. R. Muldoon, The Small World of Corporate Boards, Journal of Business Finance and Accounting, 33, (2006).
J. E. Forster, R. V. Abadi, M. Muldoon and I. C. Lloyd, Grading infantile cataracts, Ophthalmic and Physiological Optics, 26, (2006).
Eric A. Weaver, Zhongjing Lu, Zenadio T. Camacho, Fatiha Moukdar, HuaXin Liao, BenJiang Ma, Mark Muldoon, James Theiler, Gary J. Nabel, Norman L. Letvin, Bette T. Korber, Beatrice H. Hahn, Barton F. Haynes and Feng Gao, CrossSubtype TCell Immune Responses Induced by a Human Immunodeficiency Virus Type 1 Group M Consensus Env Immunogen, Journal of Virology, 80, (2006).
D. S. Broomhead, J. P. Huke, M. R. Muldoon and J. Stark, Iterated Function System Models of Digital Channels, Proceedings of the Royal Society of London, Series A, 460, (2004).
Cynthia A. Derdeyn, Julie M. Decker, Frederic BibolletRuche, John L. Mokili, Mark Muldoon, Scott A. Denham, Marintha L. Heil, Francis Kasolo, Rosemary Musonda, Beatrice H. Hahn, George M. Shaw, Bette T. Korber, Susan Allen and Eric Hunter, EnvelopeConstrained NeutralizationSensitive HIV1 After Heterosexual Transmission, Science, 303, (2004).
K. Berthelot, M. Muldoon, L. Rajkowitsch, J. Hughes and J. E. G. McCarthy, Dynamics and processivity of 40S ribosome scanning on mRNA in yeast, Molecular Microbiology, 51, (2004).
R. A. Clement, J. P. Whittle, M. R. Muldoon, R. V. Abadi, D. S. Broomhead and O. Akman, Characterisation of congenital nystagmus waveforms in terms of periodic orbits, Vision Research, 42, (2002).
Karina Yusim, Martine Peters, Oliver Pybus, Tanmoy Bhattacharya, Eric Delaporte, Claire Mulanaga, Mark Muldoon, James Theiler and Bette Korber, Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution, Philosophical Transactions of the Royal Society of London, B, 356, (2001).
M. C. Readman, M. R. Muldoon, L. Reynolds, R. Morris, M. Bayliss, D. Wood and I. Stewart, Control of free length when coiling a helical spring, IEE ProceedingsControl Theory and Applications, 148, (2001).
B. Korber, M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B. H. Hahn, S. Wolinsky and T. Bhattacharya, Timing the Ancestor of the HIV1 Pandemic Strains, Science, 288, (2000).
D. S. Broomhead, R. A. Clement, M. R. Muldoon, J. P. Whittle, C. Scallan and R. V. Abadi, Modelling of congenital nystagmus waveforms produced by saccadic system abnormalities, Biological Cybernetics, 82, (2000).
D. S. Broomhead, J. P. Huke and M. R. Muldoon, Codes for spread spectrum applications generated using chaotic dynamical systems, Dynamics and Stability of Systems, 14, (1999).
R. B. Van Dyke, B. T. Korber, E. Popek, C. Macken, S. M. Widmayer, A. Bardeguez, I. C. Hanson, A. Wiznia, K. Luzuriaga, R. R. Viscarello, S. Wolinsky and the Ariel Core Investigators, The Ariel Project: A prospective cohort study of maternalchild transmission of human immunodeficiency virus type 1 in the era of maternal antiretroviral therapy, Journal of Infectious Diseases, 179, (1999).
Xia Jin, Caroline G. P. Roberts, Douglas F. Nixon, Yunzhen Cao, David D. Ho, Bruce D. Walker, Mark Muldoon, Bette T. M. Korber, Richard A. Koup and the ARIEL Project Investigators, Longitudinal and CrossSectional Analysis of Cytotoxic T Lymphocyte (CTL) Responses and their Relationship to Vertical HIV Transmission, Journal of Infectious Diseases, 178, (1998).
M. R. Muldoon, D. S. Broomhead, J. P. Huke and R. Hegger, Delay embedding in the presence of dynamical noise, Dynamics and Stability of Systems, 13, (1998).
Yunzhen Cao, Paul Krogstad, Bette T. Korber, Richard A. Koup, Mark Muldoon, Catherine Macken, JiaLi Song, Zhanqun Jin, JlaQi Zhao, Sheila Clapp, Irvin S. Y. Chen, David D. Ho, Arthur J. Ammann and the Ariel Project Investigators, Maternal HIV1 viral load and vertical transmission of infection: The Ariel Project for the prevention of HIV transmission from mother to infant, Nature Medicine, 3, (1997).
N. Martin, R. Koup, R. Kaslow, A. A. Ammann, A. J. Ammann, D. Asthana, A. Baur, Y. Bryson, S. Clapp, S. DeLaurentis, T. Devine, M. Feinberg, J. E. Fitzgibbon, M. G. Fowler, E. M. Garratty, R. Geffin, A. Gonzaga, M. Gray, S. Hetherington, J. K. Jansen, R. A. Kaslow, A. Keller, M. E. Klotman, B. Korber, A. Louzao, K. Luzuriaga, C. Macken, B. Mathieson, G. McSherry, M. Muldoon, J. I. Mullins, K. Nielsen, J. Oleske, P. Palumbo, A. Petru, S. Plaeger, Y. Riviere, P. Rossi, G. Scott, J. L. Sullivan, S. H. Vermund, D. Wara, R. J. Winchester, C. Winkler and S. Zeegen, Workshop on perinatally acquired human immunodeficiency virus infection in longterm surviving children: A collaborative study of factors contributing to slow disease progression, Aids Research and Human Retroviruses, 12, (1996).
Mark R. Muldoon, David S. Broomhead and Jeremy P. Huke, Delay reconstruction for multiprobe signals, (1994).
R. S. MacKay and M. R. Muldoon, Diffusing through spectres: ridge curves, ghost circles and a partition of phase space, Physics Letters A, 178, (1993).
M. R. Muldoon, R. S. MacKay, J. P. Huke and D. S. Broomhead, Topology from time series, Physica D, 65, (1993).
D. S. Broomhead, J. Huke and M. R. Muldoon, Linear Filters and Nonlinear Systems, Journal of the Royal Statistical Society. Series B, 54, (1992).
This page last changed Monday, 30 January 2017